Index

_

__init__() (lyman.frontend.ExperimentInfo method) (lyman.frontend.LymanInfo method) (lyman.frontend.ModelInfo method) (lyman.frontend.ProjectInfo method) (lyman.glm.FIRBasis method) (lyman.glm.GammaBasis method) (lyman.glm.GammaHRF method) (lyman.glm.HRFModel method) (lyman.glm.IdentityHRF method) (lyman.surface.SurfaceMeasure method) (lyman.utils.LymanInterface method) (lyman.utils.SaveInfo method) (lyman.visualizations.CarpetPlot method) (lyman.visualizations.Mosaic method)

B

build_design_matrix() (in module lyman.glm)

C

cache directory cache_dir CarpetPlot (class in lyman.visualizations) check_mask() (in module lyman.utils) condition_to_regressors() (in module lyman.glm)

contrast_fixed_effects() (in module lyman.glm) contrast_matrix() (in module lyman.glm) contrasts crop_frames cv() (in module lyman.signals)

D

data directory

data_dir detrend() (in module lyman.signals)

E

estimate_residual_autocorrelation() (in module lyman.glm) execute() (in module lyman.frontend)

experiment experiment_name ExperimentInfo (class in lyman.frontend)

F

FIRBasis (class in lyman.glm)

fm_template

G

GammaBasis (class in lyman.glm)

GammaHRF (class in lyman.glm)

H

highpass_filter() (in module lyman.glm) highpass_filter_matrix() (in module lyman.glm)

hpf_cutoff hrf_derivative HRFModel (class in lyman.glm)

I

identify_noisy_voxels() (in module lyman.signals) IdentityHRF (class in lyman.glm) image_to_matrix() (in module lyman.utils)

info() (in module lyman.frontend) interpolate_noise iterative_contrast_estimation() (in module lyman.glm) iterative_ols_fit() (in module lyman.glm)

L

lyman directory lyman.frontend module lyman.glm module lyman.signals module

lyman.surface module lyman.utils module lyman.visualizations module LymanInfo (class in lyman.frontend) LymanInterface (class in lyman.utils)

M

matrix_to_image() (in module lyman.utils) model model_name ModelInfo (class in lyman.frontend) module lyman.frontend lyman.glm lyman.signals lyman.surface lyman.utils lyman.visualizations

Mosaic (class in lyman.visualizations)

N

nuisance_components

P

pca_transform() (in module lyman.signals) percent_change percent_change() (in module lyman.signals) phase_encoding plot_design_matrix() (in module lyman.visualizations)

plot_nuisance_variables() (in module lyman.visualizations) prewhiten_image_data() (in module lyman.glm) proc directory proc_dir project ProjectInfo (class in lyman.frontend)

R

remove_cache

run

S

save_residuals SaveInfo (class in lyman.utils) sb_template scan_info session smooth_fwhm smooth_segmentation() (in module lyman.signals)

smooth_surface() (in module lyman.signals) smooth_volume() (in module lyman.signals) smoothing_matrix() (in module lyman.signals) subject subjects() (in module lyman.frontend) surface_smoothing SurfaceMeasure (class in lyman.surface)

T

task_model

tr ts_template

V

vol_to_surf() (in module lyman.surface)

voxel_sigmas() (in module lyman.signals) voxel_size