Correlations and coding with multi-neuronal spike trains in primate retina

J W Pillow, J Shlens, L Paninski, A Sher, A M Litke, E J Chichilnisky and E P Simoncelli.

Published in Annual Meeting, Neuroscience, Nov 2007.

This paper has been superseded by:
Spatio-temporal correlations and visual signaling in a complete neuronal population
J W Pillow, J Shlens, L Paninski, A Sher, A M Litke, E J Chichilnisky and E P Simoncelli.
Nature, vol.454(7206), pp. 995--999, Aug 2008.


A central problem in systems neuroscience is to understand how ensembles of neurons convey information in their collective spiking activity. Correlations, or statistical dependencies between neural responses, are of critical importance to understanding the neural code, as they can greatly affect the amount of sensory information carried by population responses and the manner in which downstream brain areas are able decode it. Tackling this problem raises both experimental and theoretical challenges: recording from a complete population of neurons to sample all statistical dependencies between their responses, and developing reliable, tractable methods for assessing the sensory information carried by multi-neuronal spike trains.

Here we show that a simple, highly tractable computational model can capture the fine-grained stimulus dependence and detailed spatiotemporal correlation structure in the light responses of a complete local population of ganglion cells, recorded in primate retina. These correlations strongly influence the precise timing of spike trains, explaining a large fraction of trial-to-trial response variability in individual neurons that otherwise would be attributed to intrinsic noise. The mathematical tractability of the model permits an assessment of the importance of concerted firing by allowing us to perform Bayesian decoding of the stimulus from the spike trains of the complete population (27 cells). We find that exploiting concerted activity across the entire population preserves at least 20% more stimulus-related information than decoding under the assumption of independent encoding. These results provide a unifying framework for understanding the role that correlated activity plays in encoding and decoding sensory signals, and should be applicable to the study of population coding in a wide variety of neural circuits.


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